The Community for Technology Leaders
2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) (2012)
Breckenridge, CO
Jan. 9, 2012 to Jan. 10, 2012
ISBN: 978-1-4673-0352-1
TABLE OF CONTENTS

Max margin general linear modeling for neuroimage analyses (PDF)

Nagesh Adluru , University of Wisconsin-Madison, USA
Chad M. Ennis , University of Wisconsin-Madison, USA
Richard J. Davidson , University of Wisconsin-Madison, USA
Andrew L. Alexander , University of Wisconsin-Madison, USA
pp. 105-110

Sparse shape representation using the Laplace-Beltrami eigenfunctions and its application to modeling subcortical structures (PDF)

Seung-Goo Kim , Department of Brain and Cognitive Sciences, Seoul National University, Korea
Moo K. Chung , Department of Brain and Cognitive Sciences, Seoul National University, Korea
Stacey M. Schaefer , Waisman Laboratory for Brain Imaging and Behavior, USA
Carien van Reekum , Department of Brain and Cognitive Sciences, Seoul National University, Korea
Richard J. Davidson , Centre for Integrative Neuroscience and Neurodynamics, School of Psychology and Clinical Language Sciences, University of Reading, UK
pp. 25-32

Registration of unseen images based on the generative manifold modeling of variations of appearance and anatomical shape in brain population (PDF)

Weiwei Zhang , Section of Biomedical Image Analysis, University of Pennsylvania, 3600 Market Street, Suite 380, Philadelphia, 19104, USA
Christos Davatzikos , Section of Biomedical Image Analysis, University of Pennsylvania, 3600 Market Street, Suite 380, Philadelphia, 19104, USA
pp. 113-118

Automated abdominal fat quantification and food residue removal in CT (PDF)

Sokratis Makrogiannis , National Institute on Aging, National Institutes of Health, 3001 S. Hanover St., Baltimore, MD 21225, USA
Ramona Ramachandran , National Institute on Aging, National Institutes of Health, 3001 S. Hanover St., Baltimore, MD 21225, USA
Chee W. Chia , National Institute on Aging, National Institutes of Health, 3001 S. Hanover St., Baltimore, MD 21225, USA
Luigi Ferrucci , National Institute on Aging, National Institutes of Health, 3001 S. Hanover St., Baltimore, MD 21225, USA
pp. 81-86

Elastic symmetry analysis of anatomical structures (PDF)

Sebastian Kurtek , Florida State University, Department of Statistics, USA
Anuj Srivastava , Florida State University, Department of Statistics, USA
pp. 33-38

Building spatiotemporal anatomical models using joint 4-D segmentation, registration, and subject-specific atlas estimation (PDF)

Marcel Prastawa , Scientific Computing and Imaging (SCI) Institute, University of Utah, USA
Suyash P. Awate , Scientific Computing and Imaging (SCI) Institute, University of Utah, USA
Guido Gerig , Scientific Computing and Imaging (SCI) Institute, University of Utah, USA
pp. 49-56

Best linear unbiased estimator for Kalman filter based left ventricle tracking in 3D+T echocardiography (PDF)

Engin Dikici , Norwegian University of Science and Technology, Trondheim, Norway
Fredrik Orderud , GE Vingmed Ultrasound, Oslo, Norway
Hans Torp , Norwegian University of Science and Technology, Trondheim, Norway
pp. 201-208

A coupled segmentation and registration framework for medical image analysis using robust point matching and active shape model (PDF)

Chao Lu , School of Engineering & Applied Science, School of Medicine, Yale University, New Haven, CT 06520, USA
James S. Duncan , School of Engineering & Applied Science, School of Medicine, Yale University, New Haven, CT 06520, USA
pp. 129-136

Pictorial multi-atlas segmentation of brain MRI (PDF)

Cheng-Yi Liu , University of California, Los Angeles, Laboratory of Neuro Imaging, USA
Juan Eugenio Iglesias , University of California, Los Angeles, Laboratory of Neuro Imaging, USA
Zhuowen Tu , University of California, Los Angeles, Laboratory of Neuro Imaging, USA
pp. 65-70

A fiber tracking method guided by volumetric tract segmentation (PDF)

Chuyang Ye , Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, USA
Pierre-Louis Bazin , Department of Neurophysics, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
Sarah H. Ying , Departments of Radiology, Neurology, and Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD, USA
Jerry L. Prince , Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, USA
pp. 137-142

Parametric non-rigid registration using a stationary velocity field (PDF)

Marc Modat , Centre for Medical Image Computing, University College London, WC1 6BT, UK
Pankaj Daga , Centre for Medical Image Computing, University College London, WC1 6BT, UK
M. Jorge Cardoso , Centre for Medical Image Computing, University College London, WC1 6BT, UK
Sebastien Ourselin , Centre for Medical Image Computing, University College London, WC1 6BT, UK
Gerard R. Ridgway , Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, WC1N 3BG, UK
John Ashburner , Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, WC1N 3BG, UK
pp. 145-150

A geometric analysis of ODFs as oriented surfaces for interpolation, averaging and denoising in HARDI data (PDF)

Sentibaleng Ncube , Florida State University, USA
Qian Xie , Florida State University, USA
Anuj Srivastava , Florida State University, USA
pp. 1-6

Multi-region competitive tractography via graph-based random walks (PDF)

Brian G. Booth , Medical Image Analysis Lab, School of Computing Science, Simon Fraser University, Canada
Ghassan Hamarneh , Medical Image Analysis Lab, School of Computing Science, Simon Fraser University, Canada
pp. 73-78

Multi-STEPS: Multi-label similarity and truth estimation for propagated segmentations (PDF)

M. Jorge Cardoso , Centre for Medical Image Computing (CMIC), University College London, UK
Marc Modat , Centre for Medical Image Computing (CMIC), University College London, UK
Sebastien Ourselin , Centre for Medical Image Computing (CMIC), University College London, UK
Shiva Keihaninejad , Dementia Research Centre (DRC), University College London, UK
David Cash , Dementia Research Centre (DRC), University College London, UK
pp. 153-158

Robust tumour tracking from 2D imaging using a population-based statistical motion model (PDF)

Frank Preiswerk , Medical Image Analysis Center, University of Basel, Switzerland
Patrik Arnold , Medical Image Analysis Center, University of Basel, Switzerland
Beat Fasel , Medical Image Analysis Center, University of Basel, Switzerland
Philippe C. Cattin , Medical Image Analysis Center, University of Basel, Switzerland
pp. 209-214

Automatic detection of subcellular particles in fluorescence microscopy via feature clustering and bayesian analysis (PDF)

Liang Liang , Yale University, New Haven, CT 06520, USA
Yingke Xu , Yale University, New Haven, CT 06520, USA
Hongying Shen , Yale University, New Haven, CT 06520, USA
Pietro De Camilli , Yale University, New Haven, CT 06520, USA
Derek K. Toomre , Yale University, New Haven, CT 06520, USA
James S. Duncan , Yale University, New Haven, CT 06520, USA
pp. 161-166

Non-rigid image registration using electric current flow (PDF)

Shu Liao , Lo Kwee-Seong Medical Image Analysis Laboratory, Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong
Max W. K. Law , Lo Kwee-Seong Medical Image Analysis Laboratory, Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong
Albert C. S. Chung , Lo Kwee-Seong Medical Image Analysis Laboratory, Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong
pp. 169-174

Supervised localization of cell nuclei on TMA images (PDF)

Alessandro Ibba , Pattern Recognition Laboratory, Delft University of Technology, The Netherland
Robert P.W. Duin , Pattern Recognition Laboratory, Delft University of Technology, The Netherland
Marco Loog , Pattern Recognition Laboratory, Delft University of Technology, The Netherland
pp. 4321-4327

Sparsity and scale: Compact representations of deformation for diffeomorphic registration (PDF)

Stefan Sommer , Department of Computer Science, Univ. of Copenhagen, Denmark
Mads Nielsen , BiomedIQ A/S, Copenhagen, Denmark
Xavier Pennec , Asclepios Project-Team, INRIA Sophia-Antipolis, France
pp. 217-224

Topology preserving brain tissue segmentation using graph cuts (PDF)

Xinyang Liu , Brigham and Women's Hospital, Boston, MA, USA
Pierre-Louis Bazin , MPI for Human Cognitive and Brain Sciences, Leipzig, Germany
Aaron Carass , Johns Hopkins University, Baltimore, MD, USA
Jerry Prince , Johns Hopkins University, Baltimore, MD, USA
pp. 185-190

Toward whole-brain maps of neural connections: Logical framework and fast implementation (PDF)

Myron Zhang , Imaging Institute, The Cleveland Clinic, OH, United States
Ken E. Sakaie , Imaging Institute, The Cleveland Clinic, OH, United States
Stephen E. Jones , Imaging Institute, The Cleveland Clinic, OH, United States
pp. 193-197

Peak Geodesic Concentration: A measure of WM complexity in HARDI (PDF)

Arvind Rao , Section of Biomedical Imaging, Dept. of Radiology, University of Pennsylvania, USA
Alex Smith , Section of Biomedical Imaging, Dept. of Radiology, University of Pennsylvania, USA
Robert Schultz , Center for Autism Research, Children's Hospital of Philadelphia, USA
Timothy Roberts , Lurie Family Foundations' MEG Imaging Center, Department of Radiology, USA
Ragini Verma , Section of Biomedical Imaging, Dept. of Radiology, University of Pennsylvania, USA
pp. 233-238

Automatic atlas-based three-label cartilage segmentation from MR knee images (PDF)

Liang Shan , Department of Computer Science, UNC Chapel Hill, USA
Cecil Charles , Department of Radiology, Duke University, USA
Marc Niethammer , Department of Computer Science, UNC Chapel Hill, USA
pp. 241-246

Learning features for streak detection in dermoscopic color images using localized radial flux of principal intensity curvature (PDF)

Hengameh Mirzaalian , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
Tim K Lee , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
Ghassan Hamarneh , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
pp. 97-101

Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions (PDF)

Benoit Scherrer , Children's Hospital Boston, Department of Radiology, 300 Longwood Avenue, MA, 02115, USA
Ali Gholipour , Children's Hospital Boston, Department of Radiology, 300 Longwood Avenue, MA, 02115, USA
Simon K. Warfield , Children's Hospital Boston, Department of Radiology, 300 Longwood Avenue, MA, 02115, USA
pp. 249-254

Robust non-rigid registration and characterization of uncertainty (PDF)

Firdaus Janoos , Harvard Medical School, Boston, MA, USA
Petter Risholm , Harvard Medical School, Boston, MA, USA
William Wells , Harvard Medical School, Boston, MA, USA
pp. 4321-4326

Iterative segmentation and motion correction for dynamic PET images based on radioactive tracer kinetics (PDF)

Hengameh Mirzaalian , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
Ahmed Saad , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
Ghassan Hamarneh , Medical Image Analysis Lab, Simon Fraser University, BC, Canada
pp. 265-270

Spatial dispersion of lesions as a surrogate biomarker for disability in multiple sclerosis (PDF)

Fahime Sheikhzadeh , MS/MRI Research Group, University of British Columbia, Vancouver, Canada, V6T 1Z4
Roger Tam , MS/MRI Research Group, University of British Columbia, Vancouver, Canada, V6T 1Z4
Ghassan Hamarneh , Medical Image Analysis Lab, Simon Fraser University, Vancouver, BC, Canada, V5A 1S6
pp. 273-278

A generalized correlation coefficient: Application to DTI and multi-fiber DTI (PDF)

Maxime Taquet , ICTEAM Institute, Université catholique de Louvain, Louvain-La-Neuve, Belgium
Benoit Macq , ICTEAM Institute, Université catholique de Louvain, Louvain-La-Neuve, Belgium
Simon K. Warfield , Computational Radiology Laboratory, Harvard Medical School, Boston, USA
pp. 9-14

Motion modelling and motion compensated reconstruction of tumours in cone-beam computed tomography (PDF)

James Martin , Centre for Medical Image Computing, University College London, WC1E 6BT, UK
Jamie McClelland , Centre for Medical Image Computing, University College London, WC1E 6BT, UK
Christopher Thomas , Oncology Department, Guy's and St. Thomas' NHS Foundation Trust, London, UK
Kate Wildermuth , Oncology Department, Guy's and St. Thomas' NHS Foundation Trust, London, UK
David Landau , Oncology Department, Guy's and St. Thomas' NHS Foundation Trust, London, UK
Sebastien Ourselin , Centre for Medical Image Computing, University College London, WC1E 6BT, UK
David Hawkes , Centre for Medical Image Computing, University College London, WC1E 6BT, UK
pp. 281-286

Reconstruction of HARDI using compressed sensing and its application to contrast HARDI (PDF)

Sudipto Dolui , Department of Electrical and Computer Engineering, University of Waterloo, Ontario, N2L3G1, Canada
Ivan C. Salgado Patarroyo , Department of Electrical and Computer Engineering, University of Waterloo, Ontario, N2L3G1, Canada
Oleg V. Michailovich , Department of Electrical and Computer Engineering, University of Waterloo, Ontario, N2L3G1, Canada
Yogesh Rathi , Psychiatry Neuroimaging Laboratory, Department of Psychiatry, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
pp. 17-23

Using a flexibility constrained 3D statistical shape model for robust MRF-based segmentation (PDF)

Tahir Majeed , Medical Image Analysis Center, University of Basel, Switzerland
Ketut Fundana , Medical Image Analysis Center, University of Basel, Switzerland
Marcel Luthi , Computer Science Department, University of Basel, Switzerland
Silja Kiriyanthan , Medical Image Analysis Center, University of Basel, Switzerland
Jorg Beinemann , Hightech Research Center of CMF Surgery, University Hospital Basel, Switzerland
Philippe C. Cattin , Medical Image Analysis Center, University of Basel, Switzerland
pp. 57-64

Vascular bifurcation detection in scale-space (PDF)

Daniel-Marian Baboiu , Simon Fraser University, Burnaby BC, Canada, V5A 1S6
Ghassan Hamarneh , Simon Fraser University, Burnaby BC, Canada, V5A 1S6
pp. 41-46

Polyaffine parametrization of image registration based on geodesic flows (PDF)

Michael S. Hansen , Harvard Medical School, Children's Hospital, 330 Longwood av., Boston, USA
Signe S. Thorup , Harvard Medical School, Children's Hospital, 330 Longwood av., Boston, USA
Simon K. Warfield , Harvard Medical School, Children's Hospital, 330 Longwood av., Boston, USA
pp. 289-295

Segmentation of left ventricles from echocardiographic sequences via sparse appearance representation (PDF)

Xiaojie Huang , Departments of Electrical Engineering, Yale University, New Haven, CT, USA
Ben A. Lin , Departments of Internal Medicine, Yale University, New Haven, CT, USA
Colin B. Compas , Departments of Biomedical Engineering, Yale University, New Haven, CT, USA
Albert J. Sinusas , Departments of Diagnostic Radiology, Yale University, New Haven, CT, USA
Lawrence H. Staib , Departments of Electrical Engineering, Yale University, New Haven, CT, USA
James S. Duncan , Departments of Electrical Engineering, Yale University, New Haven, CT, USA
pp. 305-312
93 ms
(Ver 3.3 (11022016))